Installed software

glotzerlab-software includes the following installed inside the container.

• Ubuntu

• python

• Glotzer lab open-source software:

  • coxeter

  • fresnel

  • freud

  • garnett

  • GSD

  • HOOMD-blue

  • plato

  • pythia

  • rowan

  • signac

  • signac-dashboard

  • signac-flow

• Additional tools commonly used in simulation/analysis workflows:

  • ffmpeg

  • h5py

  • jupyter

  • matplotlib

  • mpi4py

  • numpy

  • pandas

  • pillow

  • PyQt5

  • pyyaml

  • scipy

  • scikit-learn

  • scikit-image

• Compilers, tools, and libraries needed to build additional software:

  • cmake

  • CUDA

  • cython

  • embree

  • git

  • LLVM/clang

  • pybind11

  • pytest

  • qhull

  • sqlite3

  • sphinx

  • TBB

  • zlib

Note

Launch python with the python3 command inside the container.

To request additional software in the container, contact the user community.